ACERT Key Publications: Recent Publications

at

National Biomedical Center

for Advanced Electron Spin Resonance Technology

Key publications

Recent Publications

last update: October 3, 2008

Articles:

Membrane-Bound Alpha-Synuclein Forms an Extended Helix: Long Distance Pulsed ESR Measurements Using Vesicles, Bicelles, and Rod-like Micelles E.R. Georgieva, T.F. Randall, P.P. Borbat, J.H. Freed, D. Eliezer J. Am. Chem. Soc 130, 12856-12857 (2008).
Using Markov Chain Models to Simulate ESR Spectra from Molecular Dynamics Trajectories of a Nitroxide Spin Label D. Sezer, J.H. Freed, B. Roux J. Phys. Chem. B 112, 11014-11027 (2008).
Parametrization, Molecular Dynamics Simulation, and Calculation of ESR Spectra of a Nitroxide Spin Label on a Poly-alanine Alpha Helix D. Sezer, J.H. Freed, B. Roux J. Phys. Chem B 112, 5755-5767 (2008).
Simulating ESR Spectra of Nitroxide Spin Labels from Molecular Dynamics and Stochastic Trajectories D. Sezer, J.H. Freed, B. Roux J. Chem. Phys 128, 165106-1-16, (2008).
Membrane Fluidity B.G. Dzikowski and J.H. Freed Wiley Encyclopedia of Chemical Biology, T.P. Begley and B.A. Baird, Eds. (in press, 2008).
Pros and Cons of Pulse Dipolar ESR: DQC and DEER Peter P. Borbat and Jack H. Freed EPR Newletter 17, 21-33 (2007).
Determination of the Oligomeric States of Human and Rat Monoamine Oxidases in the Outer Mitochondrial Membrane and Octyl β-D-Glucopyranoside Micelles Using Pulsed Dipolar Electron Spin Resonance Spectroscopy Anup K. Upadhyay, Peter P. Borbat, Jin Wang, Jack H. Freed, and Dale E. Edmondson Biochemistry 47, 1554-1566 (2008).
2D-ELDOR using full S_c- fitting and absorption lineshapes Yun-Wei Chiang, Antonio Costa-Filho, Jack H. Freed J. Magn. Res. 188, 231-245 (2007).
Dynamic Molecular Structure and Phase Diagram of DPPC/Cholesterol Binary Mixtures: A 2D ELDOR Study Yun-Wei Chiang, Antonio J. Costa-Filho, and Jack H. Freed J. Phys. Chem. B 111, 11260-11270 (2007).
Conformational Motion of the ABC Transporter MsbA Induced by ATP Hydrolysis Peter P. Borbat, Kavitha Surendhran, Marco Bortolus, Ping Zou, Jack H. Freed, Hassane S. Mchaourab PLoS Biology 5, 2211-2219 (2007).
An Improved Picture of Methyl Dynamics in Proteins from Slowly Relaxing Local Structure Analysis of ²H Spin Relaxation Eva Meirovitch, Yury E. Shapiro, Antonino Polimeno, and Jack H. Freed J. Phys. Chem. B 111, 12865-12875 (2007).
Two-Dimensional ELDOR in the Study of Model and Biological Membranes Y.-W. Chiang, A. J. Costa-Filho, and J. H. Freed Applied Magn. Res. 31, 375-386 (2007).
Rigid Body Refinement of Protein Complexes with Long-Range Distance Restraints from Pulsed Dipolar ESR Jaya Bhatnagar, Jack H. Freed, and Brian R. Crane Two-Component Signaling Systems, Part B, M. Simon, B. R. Crane and A. B. Crane, Eds. Methods in Enzymology 423, Ch. 4, 117-133 (2007).
Measuring Distances by Pulsed Dipolar ESR Spectroscopy: Spin-Labeled Histidine Kinases Peter P. Borbat and Jack H. Freed Two-Component Signaling Systems, Part B, M. Simon, B.R. Crane and A.B. Crane, Eds., Methods in Enzymology 423, Ch. 3, 52-116 (2007).
Characterizing the structure and dynamics of folded oligomers: Pulsed ESR studies of peptoid helices Aaron T. Fafarman, Peter P. Borbat, Jack H. Freed and Kent Kirshenbaum Chem. Comm. (4) 377-379 (2007).
Inter-Helix Distances in Lysophospholipid Micelle-Bound α-Synuclein from Pulsed ESR Measurements Peter Borbat, Trudy F. Ramlall, Jack H. Freed, and David Eliezer J. Am. Chem. Soc. 128, 10004-05 (2006).
ESR Microscopy and Nanoscopy with “Induction” Detection A. Blank and J.H. Freed Isr. J. Chem. 46, 423-438 (2006).
Methyl Dynamics in Proteins from NMR Slowly Relaxing Local Structure Spin Relaxation Analysis: A New Perspective Eva Meirovitch, Antonino Polimeno, and Jack H. Freed J. Phys. Chem. B 110, 20615-20628 (2006).
Collective Fluctuations in Ordered Fluids Investigated by Two-Dimensional Electron-Electron Double Resonance Spectroscopy Barbara Fresch, Diego Frezzato, Giorgio J. Moro, Gerd Kothe, and Jack H. Freed J. Phys. Chem. B 110, 24238-24254, (2006).
Dynamics of the Nitroxide Side Chain in Spin-Labeled Proteins Fabio Tombolato, Alberta Ferrarini, and Jack H. Freed J. Phys. Chem. B 110, 26248-26259 (2006).
Modeling the Effects of Structure and Dynamics of the Nitroxide Side Chain on the ESR Spectra of Spin-Labeled Proteins Fabio Tombolato, Alberta Ferrarini, and Jack H. Freed J. Phys. Chem. B 110, 26260-26271 (2006).
Protein Dynamics from NMR: The Slowly Relaxing Local Structure Analysis Compared with Model-Free Analysis Eva Meirovitch, Yury E. Shapiro, Antonino Polimeno, and Jack H. Freed J. Phys. Chem. A 110, 8366-8396 (2006).
Two-Pulse Electron Spin Echo Study of Deuterium-Helium Solids E. P. Bernard, V. V. Khmelenko, E. Vehmanen, P. P. Borbat, J. H. Freed, and D.M. Lee Proceedings 24 th Intl. Conf. on Low Temp. Physics 372-373 (2006).
Pulse Electron Spin Resonance Method For Investigation Of Atoms In Impurity-Helium Solids E. P. Bernard, V. V. Khmelenko, E. Vehmanen, P. P. Borbat, J. H. Freed, and D.M. Lee Proceedings 24 th Intl. Conf. on Low Temp. Physics 1659-1660 (2006).
Reconstruction of the chemotaxis receptor–kinase assembly Sang-Youn Park, Peter P Borbat, Gabriela Gonzalez-Bonet, Jaya Bhatnagar, Abiola M Pollard, Jack H Freed, Alexandrine M Bilwes & Brian R Crane Nature Struct. and Molec. Biol. 13, 400-407 (2006).
Electron spin resonance microscopy applied to the study of controlled drug release Aharon Blank, Jack H. Freed, Naraharisetti Pavan Kumar, Chi-Hwa Wang J. of Controlled Release 111, 174-184 (2006).
High-field ESR on aligned membranes: A simple method to record spectra from different membrane orientations in the magnetic field Boris Dzikovski, Keith Earle, Serguei Pachtchenko, Jack Freed J. Mag. Res. 179, 288-294 (2006).
Coexisting Domains in the Plasma Membranes of Live Cells Characterized by ESR Spectroscopy Musti J. Swamy, Laura Ciani, Mingtao Ge, Andrew K. Smith, David Holowka, Barbara Baird, and Jack H. Freed Biophys. J. 90, 4452-4465 (2006).